Sentence examples for minimum alignment size from inspiring English sources

The final alignment consisted of 1042 sequences, with correlations being calculated with a cutoff score of 10, minimum alignment size of 20% and Δf = 0.30.

The parameters used were minimum alignment size 80 nt, minimum percentage of sequence identity 0.25 and maximum e-value 0.001 and low complexity mask on.

Default parameters were used for BLASTN searches, with the following exceptions to account for the divergence and short length of the sequences available: minimum alignment size 80 nt, minimum percentage of sequence identity 25%%, maximum e-value 0.001 and low complexity mask on.

Pairwise correlation scores were calculated for all residue+position pairs which were present on at least 25% of the sequences (minimum sub-alignment size was calculated as described in [ 37]).

The minimum sample size was estimated at 456 children.

Two-way ANI was calculated from draft genomes and reference genomes using the ANI calculator (available at http://enve-omics.ce.gatech.edu/ani/index) using ANI options of minimum length 700 bp, minimum identity 70%, minimum alignments 50, window size 1,000 bp, and step size 200 bp.

Each genome was scanned against defined loci contained in the PubMLST Neisseria sequence definition database using the default parameters (70% minimum identity; 50% minimum alignment; and a BLASTN word size of 15).

All the alignments were carried out with a minimum alignment ratio of 0.93, and the minimum size of alignment of 20.

Parameters allow modification of the alignment weights, minimum alignment score to report, and maximum pattern size detected.

We used the following parameter values within TRF for genome analysis: alignment weights +2, −7, −7 (representing match, mismatch and indel penalties); matching probability of 0.80 and an indel probability of 0.10 (pM = 0.80 and pI = 0.10, respectively); a minimum alignment score of 20 and a maximum period size of 10.

We used stringent cut-off parameters as follows: matching weight = 2, mismatching penalty = 7, indel penalty = 7, match probability = 80, indel probability = 10, minimum alignment score to report = 50, and maximum period size to report = 6.