Sentence examples for minimum alignment coverage from inspiring English sources

Sequence alignments with BLAST were carried out using a threshold E-value of 10-5 and a minimum alignment coverage of 20% of the query sequence.

P2TF predicts TF candidates by performing a domain analysis of each protein sequence using RPS-BLAST and considering an E-value cut-off of 0.01 and minimum alignment coverage of 50% for each domain length.

To avoid the presence of fragments or too divergent sequences, a minimum alignment coverage of 80% and minimum identity of 15% were imposed to all sequences, using human RXR-α as reference sequence.

Minimum alignment length coverage (-L parameter) varied between 0.1 and 0.9 with step size 0.1.

We aligned 454 contigs and ESTs to Amel_4.5 using MAKER2 v2.15, which uses WU-BLAST [ 77] and Exonerate est2genome [ 78], with minimum 80% alignment coverage and 95% identity.

When either minimum alignment identity or coverage is increased, more gene families are formed and fluidity increases (see Additional file 1, Figure S5).

The entire proteomes of the two genomes were compared, with only the top reciprocal BLASTP matches per chromosome pair selected (minimum of 50% alignment coverage at a cutoff of < E-20).

We aligned protein sequences to Amel_4.5 using Exonerate protein2genome with a minimum 60%percentt identity and 60% alignment coverage.

For the definition of a valid genome mapping, we used the following criteria: minimum alignment identity and the minimum coverage of the EST sequence of at least 80%.

Thresholds were set to a minimum alignment length of 70 nucleotides, minimum query coverage of 90% and minimum per cent identity of 80%.

riboPicker uses query sequence coverage, alignment identity and minimum alignment length thresholds to determine if an input sequence is an rRNA-like sequence or not.