The posterior error probability ps is therefore minimized when the alignment with the fewest mismatches is selected.
Note that the optimization of alignment is to minimize the total alignment score due to the negative signs in Eq. (1).
The samples were blended with α-alumina (25 wt%) as an internal standard and mounted on a plate by the side-load method to minimize the preferred alignment of the phyllosilicates, and the mineral assemblages were determined by using the RockJock program (Eberl 2003).
BMGE also allows a number of useful recoding and trimming aimed at minimizing compositional heterogeneity in the alignment dataset and therefore the risk of phylogenetic artefacts.
The five repeated measurements of the FC angles were done both in an attempt to minimize random error in the alignment of a true lateral scintigram and to investigate the amount of variation that occurs when repositioning the horse.
If several alignments are possible, we select the alignment that minimizes the mismatch score.
Contig classifying approaches generally had higher precision values as aligning longer queries minimizes the chance of a colliding alignment with database entries containing short errors, e.g., flanking vector sequences.
Two-stage optimization Locate stations first to maximize the demand, then find the alignment to minimize the cost.
To test the effectiveness of the proposed concurrent station location and alignment optimization model, the following two optimization methods are examined: Two-stage optimization Locate stations first to maximize the demand, then find the alignment to minimize the cost.
Instead, we restrict the search by considering few possibilities; in order to define the optimal pose of a given object, the alignment, which locally minimizes the visual-hull criterion (1), is taken as one of the three possible alignments obtained according to the following procedure.
The use of a relatively small and highly informative set of proteins as a database increases power (smaller search-space, smaller e-values) and minimizes the chance for noisy alignments with non-homologous or non-annotated proteins.
