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We extracted the glutamate receptor signaling subnetwork from the human interactome using the Steiner minimal tree algorithm.
We extracted the subnetwork as a SZ-specific network from the whole human interactome by using Steiner minimal tree algorithm [15].
To explore the organization and the environment of the proteins encoded by SZGenes, we extracted the schizophrenia specific subnetwork (SZ-specific network) from the whole network using SZGenes and the Steiner minimal tree algorithm [15].
Then, the network was clustered and simplified to a minimum network through the Steiner minimal tree algorithm.
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The minimal spanning tree algorithm could be run on the nodes involving a multicast connection.
(c) The virtual graph which is obtained by executing the minimal spanning tree algorithm on the modified graph.
Third, we infer TEDG from ISN by removing indirect associations with spectral techniques and minimal spanning tree algorithm.
A co-expression tree that grouped transcripts with the most similar expression profiles was built using correlation coefficients and a minimal spanning tree algorithm.
The paper introduces a number of new ideas, including a minimal spanning tree algorithm for eliminating redundant distance information in a full pairwise distance matrix in order to yield an estimate of the true number of paralogous genes.
Non-redundant patterns correspond to minimal tree pattern queries [1] in tree databases.
Classification accuracies from J48 algorithm, Best first tree algorithm, random forest tree algorithm, functional tree algorithm and linear model tree algorithm are compared and the best algorithm for such a system is suggested.
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