UPGMA analysis produced phylogenetic trees that were almost identical to the neighbor-joining trees and results of phylogenetic analysis with maximal parsimony and minimal evolution approaches (trees not shown).
Moreover, an additional phylogenetic tree was constructed by each of the maximum likelihood (ML), neighbor joining (NJ) and minimal evolution (ME) algorithms.
The topological distance (dT) was set at 2 for searching the minimal evolution tree.
Minimal-evolution (ME) trees were built by using the default options of FastME (balanced greedy minimal evolution to build the initial tree and balanced nearest-neighbor interchanges for swapping and optimization).
To reconstruct phylogenetic trees we used neighbor-joining method and the minimal evolution method implemented in the MEGA3 program [ 36].
However, the P. chrysosporium CYP58 homologues form a cluster separate from other fungal CYP58 proteins on the minimal evolution tree.
CV carried out parts of the molecular evolution analysis.
Furthermore, FSIGTT with the minimal model analysis may overestimate SG.
