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The remaining IAP-derived 19mers have minimal downstream sequence bias, and likely represent RNA degradation products.
Many of those in the same orientation have a 5' U and minimal downstream sequence bias, suggesting they represent p-piRNA degradation products, while most reads in the opposite sense were found to have a bias towards A 10nt downstream of their 3' termini.
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Each sequence is also scanned for a minimal LRR-NT pattern in the upstream sequence and for a minimal LRR-CT pattern (one of three possible types) in the downstream sequence.
The processing and transport of essential elements follow a downstream sequence.
Moreover, this method is expedient as it requires minimal downstream manipulation.
P dnaK prolonged to the downstream sequence of initiation coden and carried additional optimal RBS and AS of R4a.
This UAG codon is followed by a PYLIS downstream sequence.
The regulatory function of the downstream sequence is less well understood.
Previously developed Pyrosequencing protocols [24] [26] were used for downstream sequence validation.
The second sequence element, called the downstream sequence element (DSE), begins ∼15 nt downstream of the PAS.
The ratio of the adjacent control sequences was 1.12 for upstream and 1.11 for downstream sequence.
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