Sentence examples for minimal contig length from inspiring English sources

The Trinity assembly was run with a default fixed k-mer length of 25, minimal contig length of 500 bp, minimal k-mer coverage of 2 and a butterfly heap space size of 50GB.

The de novo assembly for each enzyme and the combined dataset for rice and the dataset of saffron crocus was performed using Trinity [ 47] with a minimal contig length of 100 bp.

Assembly of J. osense plastome was performed using CLC Genomics Workbench v. 5.5 with following parameters: word size = 22, bubble size = 50, mismatch cost = 2, insertion cost = 3, deletion cost = 3, minimal contig length = 1,000 bp.

Other settings used were a minimal contig length of 300 bp, automatically determined maximum bubble size, and use of the scaffolding algorithm, which uses paired-end information to scaffold the contigs (using the following settings: mismatch cost = 3; insertion cost = 3; deletion cost = 3; similarity fraction = 0.95; length fraction = 0.5).

Genome assembly was performed using Velvet version 1.2.10 [ 40], using a hash length of 29, a minimum contig length of 500 and a minimal coverage of 20.

The minimum contig length parameter was set to 70 bp.

Standard parameters were used and the minimum contig length was 300 bp.

The minimum contig length was set to 200 bases.

Kmer 123 127 Number of contigs 43 30 Assemply length 32,855 16,832 N50 contigs 16 12 N50 length 673 bp 625 bp Min contig length 281 389 Max contig length 3818 920 Avg contig length 631 621 Table 4 Plant species found in the composite honey sample of Aizawl using NGS technology S. no.

Table 1 Assembly statistics information   Raw assembly Duplicate removed assembly Trinity 'genes' 27,389 24,000 Trinity transcripts 31,068 25,234 GC content 40.84 40.71 Median contig length (bp) 722 622 Average contig length (bp) 1269.6 1160.9 Total assembled bases (bp) 39,444,068 29,294,166.

As can be seen from Tables 1 and 2, this step resulted in an overall reduction of 207 kb in total contig length for the six pools and an increase in both contig N50 and scaffold N50.