Transcription factors were identified among differentially expressed genes using Genomatix® Bibliosphere (Munich, Germany), a text mining database derived from published articles.
In earlier work, there was an interest in mining databases created from several studies, and estimates of expression relative to a common standard seemed desirable.
To fill the gap in knowledge about sequence similarities and differences among cultivated and wild tomato species, we mined the EST and unigene tomato database from SGN in search for substitutions and insertions/deletions between and within the three species with highest representation: S. lycopersicum, S. habrochaites and S. pennellii.
Bioinformatics is being increasingly used to support target validation by providing functionally predictive information mined from databases and experimental datasets using a variety of computational tools.
In other cases, for example molecules, lists of entities mined from databases such as ChEBI (11) are used.
INFORMATICA CORP., Redwood City, Calif., which makes software used to mine information from databases, said it agreed to acquire Striva Corp., Scotts Valley, Calif., a maker of data-managing software, for about $62 million in stock and cash.
1 The sequences were mined from Japonica database or investigated from phage clones isolated from Indica (IR36) genomic library. 2 Chromosome no. on which the ERTBV segment resides. 3 Nucleotide positions of ERTBV in the registered genomic clone.
It has five top tabs and a menu on the left that enable database mining from different entry points.
We compared the candidate DO annotations to a pre-existing gene-disease annotation database mined from NCBI's GeneRIFs [ 21].
Database mined sequences from Dr, Ol and Ga were PCR amplified from genomic DNA and sequenced for confirmation.
