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Each Bayesian MCMC analysis was run for 30 million states and sampled every 10,000 states.
Posterior probabilities were calculated with a burn-in of 4 million states and checked for convergence with Tracer v1.4 [23].
For twenty genes, there will be over a million states.
The chains were combined using LogCombiner discarding the initial 10 million states as burn-in.
The chains were run until convergence was reached (i.e., until the effective sample size for each parameter exceeded 200), which was 93 million states for the DNA sequence data and 10 million states for the amino acid sequence data.
We ran 20 independent parallel BEAST chains sampling every 2,000 states for between 52 and 64 million states using a total of 240,000 core hours.
Similar(48)
Consider France's 5.4 million state jobs.
In short, two states?
Eight states joined later.
Nineteen states have none.
Two states for two peoples.
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