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In Figures 2 and 3, micrographs are shown as apparent two-dimensional (2D) images composed of all z-sections made, which was arranged by confocal microscopy software.
The root-mean-square (rms) distribution profiles of the SPP films are measured by scanning probe microscopy software (WSx M, Nanotec Electronica S.L., Madrid, Spain).
The rms value of the surface roughness of the virgin and Ar plasma-treated muga fibers is measured using a scanning probe microscopy software (WSxM).
Further, to obtain image mapping of the chemical groups, Nicolet iN10 Infrared microscope (Thermo Scientific) with OMNIC Picta microscopy software (Thermo Scientific) was used to collect images from the aminosilane-modified steel surface.
We describe relationships between Eulerian angles conventions used in different electron microscopy software packages, as well as give examples of the simple scripts that execute conversions of Eulerian angles between these packages and handle other related tasks.
Resolution was optimized by deconvolution microscopy software.
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Data analysis was performed using the scanning-probe-microscopy software WSxM.
The simulated diffraction patterns were indexed using the module "Nanodiffraction" in the java electron microscopy simulations software package [26].
The second one contains the ribosome (70S, PDB code: 4V7C) projections that are generated by using the electron microscopy simulation software InSilicoTEM (Vulovic et al., 2013), with the effects of contrast transfer function (CTF) and camera taken into account (Fig. 4B).
The images were exported as jpg format from the Zeiss microscopy imaging software (AxioVision version 4.7).
μManager microscopy automation software [ 34] running on a 64 bit Windows 7 (Microsoft) system was used to control the Arduino based shutter, the LX-4000 stage control unit, and the ORCA II camera.
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