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For other genetic variants such as microsatellites, we compared the allele between cases and controls, as used in the literature and other meta-analyses [ 12, 13].
To assess the validity of the identified conserved microsatellites, we compared their positions with regions previously found to be suspiciously aligned in the 17-WA of human chromosome 1 using a statistical assessment (Prakash and Tompa 2007).
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Performing PCR-based fluorescence microsatellite analysis and using a panel of seven polymorphic microsatellite markers, we compared the profiles of LOH in primary tumors, peripheral blood and BM plasma from patients with primary BCa (n = 40, stage M0) as well as tumor tissues and blood serum from metastatic BCa patients (n = 48, stage M1).
Using 17 microsatellite loci, we compared genetic diversity and structure of the populations and estimate their effective size before and after Ebola outbreaks.
Through 10 nuclear microsatellite loci, we compared population genetic parameters.
Through 10 nuclear microsatellite loci we compared population genetics parameters and found that A. inaequidens exhibits high levels of genetic diversity (He=0.707) and moderate genetic structure (F ST =0.112) with no differences among wild and managed populations.
To identify potential microsatellite regions, we compared the HdrR and the HNI genome by using Sputnik (Katsumura et al. 2009) and identified regions with a maximal repeat unit length of 2 and the minimum length of simple sequence repeat set to 20.
Using a multilocus scan of differentiation based on microsatellite data, we compared three different methods that aimed at detecting outliers from simulated neutral expectations: 1) the Ewens-Watterson method [ 44, 45], 2) the FDIST2 method [ 9], and 3) a BAYESFST method [ 12].
We compared microsatellite (STRP) loci genotype profiles and mtDNA sequence data against a spatial map of allele frequencies constructed from orthologus genotypes from georeferenced chimpanzee DNA samples from ten locations spanning Cameroon and Nigeria.
We compared microsatellite abundance in every genome relative to that of HMs (fig. 1 A and supplementary table S2, Supplementary Material online) and found proportions ranging from 87.88% in chimpanzee to 15.52% in opossum for mammals and to 1.24% in fugu for vertebrates.
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