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Thus, we can define microsatellites based on the dynamics of strand slippage, their major mutational mechanism.
In addition, four supercontigs contained no useful microsatellites based on our selection criteria.
We named microsatellites based on chromosome number and location in units of 10 kb.
We also estimated the age of specific alleles of imperfect microsatellites based on the population data (DGRP).
PIPEMicroDB can be accessed to extract microsatellites based on motif type (mono, di, tri, tetra, penta and hexa), repeat motif and repeat kind (perfect and compound).
The polymorphism information content of 64 microsatellites based on 21 different Physcomitrella accessions was comparably high with a mean of 0.47 +/- 0.17.
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The use of unique multiplex barcodes for each of the Agave accessions allowed for the identification of putatively polymorphic microsatellites based solely on sequence alignment analysis.
Only limited but contrasting reports are available on microsatellites based population structure of Plasmodium vivax.
Most microsatellites tested for the panel had comparable variation over all breeds, so the selection of microsatellites was based on other standard criteria, such as small product size, robustness of amplification and clarity in scoring.
Densities of microsatellites were based on sequence length excluding segmental duplications and repeats, unless stated otherwise.
Among these microsatellites identified based on our cut-off criteria, tri-nucleotide motif types were the most abundant (2821, 48.71%).
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