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Diverse microbial groups were found in the transcriptome dataset even though the continuous culture was running for more than 15 years (Fig. 1).
Five microbial groups were considered in the model: facultatively aerobic bacteria or denitrifiers, fermenters, and sulfate-, mandanese-, and iron-reducers.
However, no dissimilarities in cell population densities or population ratios of the microbial groups were detected in the rhizosphere of the two plant lines.
Furthermore, soil microbial groups were highly correlated with soil SOC (P < 0.001), C/N ratio (P < 0.001), pH (P < 0.01), total nitrogen (P < 0.01), and the proportion of aggregates with a >0.25 mm diameter (P < 0.05).
RDA analysis showed that FAME signatures representing different microbial groups were positively associated with soil pH, OM, P and base cations concentrations, whereas microbial biomass was negatively associated with the same environmental factors.
Three microbial groups were defined: (A) A-group: wild-type bacteria strains treated with adequat antibiotherapy; (B) B-group: antibiotic resistant bacteria treated with adequat antibiotherapy; (C) C-group: multi-drug resistant bacteria treated with inadequat antibiotherapy.
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The majority of newly discovered microbial groups are cryptic lineages that greatly outnumber the 'known' diversity of life4, and are recognized only as DNA sequences stored in databases.
However, plant genetic properties accounting for these plant phenotypic differences are not well understood, and those determining differences in root-associated functional microbial groups are even less understood.
When the spatio-temporal dynamics of microbial groups are accounted for, our simulations show the importance of reaction energetics and nutrient limitations such as microbial nitrogen demands.
Two major microbial groups are now believed to be involved in ammonia oxidation: chemolithotrophic ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA).
Nutrient-enriched corals were associated with significant increases in Rickettsia-like organisms, which are currently one of several microbial groups being investigated as a disease agent in this coral species.
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