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High complexity of rumen microflora has led researchers to find particular microbial groups that could serve as an indicator of health promoting microbiota.
Microbial groups that do not differ between control and treatment piglets were filtered out with a threshold of 0.01.
After a two-way ANOVA analysis in maSigPro, there were 46 microbial groups that showed significant differences over time or treatment compared to the control.
Furthermore, we were able to identify potential key regulator genes (hubs) for the long-lasting effects and we have identified microbial groups that are potentially associated with the observed changes in intestinal gene expression.
Already, SCG offers routine recovery of genomic blueprints of microbial groups that used to be inaccessible because of the absence of their pure cultures (Marcy et al., 2007; Rinke et al., 2013; Swan et al., 2013).
Genomes obtained through a SCG approach have been reported for marine bacterial strains and for insect endosymbionts [ 144– 147], and this presents a unique opportunity to identify the metabolic features, the timeline of species evolution, and the inter-organismal interactions of the uncultured microbial groups that dominate the olive mill wastes.
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Thus, which microbial group that responded to alleviating N-limitation depended on the C-source in the soil.
Genome annotation of Streptomyces coelicolor[ 3], which is the model system for this microbial group, revealed that it encodes 819 potentially secreted proteins including hydrolases, proteases/peptidases, chitinases/chitosanases, cellulases/endoglucanases, amylases and pectate lyases.
Our main findings center on the identification of microbial community patterns and specific bacterial groups that are altered by smoking.
The radial diffusion assays were conducted against five microbial species covering a spectrum of groups that have the capability to grow into earwig burrows.
In the concept of microbial guilds, analytical systems are being developed also for certain bacterial groups that carry out the intermediary metabolism [73, 74].
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