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Vallenet, D. et al. MicroScope: a platform for microbial genome annotation and comparative genomics.
The genome was annotated using the Microbial Genome Annotation Pipeline (MiGAP) [ 15] with manual verification.
The genome was annotated using the Microbial Genome Annotation Pipeline (MiGAP) [ 43] and some of the results were manually curated.
The genome sequence was automatically annotated with the Microbial Genome Annotation Pipeline and manually curated using the IMC-GE software (In Silico Biology, Inc).
At first, the genome sequence was automatically annotated using the MiGAP, Microbial Genome Annotation Pipeline (www.migap.org) with the g-MiGAP level.
Markowitz, V. M. et al. IMG ER: a system for microbial genome annotation expert review and curation.
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For genomic and proteomic analysis, genomes of M. magneticum AMB-1, Magnetococcus sp. MC-1 and M. magnetotacticum MS-1 were imported into the microbial genome expert annotation system MaGe provided by Genoscope (https://www.genoscope.cns.fr).fr
In the context of the French National Sequencing Center (CEA/DSV/Institut de Génomique/Genoscope), we have developed a platform, named MicroScope, to support microbial genome (re)annotation and comparative analysis.
To date, over 12,000 users have registered in RAST and have submitted over 60,000 distinct microbial genomes for annotation.
These features of the MGA expedite wide ranges of microbial genome studies, such as genome annotations and metagenome analyses.
To address this need, we developed the Annotation of microbial Genome Sequences (AGeS) software system, which incorporates publicly available and in-house-developed bioinformatics tools and databases for integrated high-throughput genome annotation and protein function prediction.
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