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There was high variability in the local microbial diversity for all of the sampled plots, with significant differences among the vineyards under ecological and conventional soil management.
Our study has shown that the WaMS sampling system is autonomous, versatile and robust, and due to its deployment on the established CPR network, is a cost-effective monitoring tool for microbial diversity for the detection of smaller and delicate taxa.
Cluster analysis of DGGE band profiles revealed significant differences in band patterns (number of bands reflecting the microbial diversity) for bacteria, archaea, and fungi.
The use of only one host, however, may limit the exploitation of microbial diversity for a given habitat due to, for instance, differences in codon utilization and/or mRNA and protein stability among different hosts.
This derived the global ocean sampling exploration (GOS) project that was launched in 2003 by JC Venter to gain understanding of microbial diversity for entire marine environments, including coastal water, open ocean, seafloor and seawater at different depths [ 1, 3, 4, 19- 21].
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The Shannon Weaver index for microbial diversity of sample of D.4 was 1.05.
Over 30 years, the 16S rRNA sequence was used for prokaryotic phylogeny inference and taxonomic classification and for inferring the microbial diversity of environmental samples.
To reveal the microbial diversity of granular sludge, biomass samples for high-throughput sequencing analysis were harvested on day 133.
Cultural microbiology remains crucial for investigating microbial diversity and for the selective isolation of representatives of key functional groups, including pathogens.
A number of microbial diversity indices for the 16S rDNA Illumina reads are shown in Table 2.
To better understand the minimal microbial diversity required for IgE suppression, germfree mice were first colonized by a single species, E. coli, which was incapable of suppressing IgE levels.
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