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In this review, the currently available methods and emerging approaches for characterising microbial communities, including both planktonic and biofilm ways of life, are critically evaluated.
We used polar lipid fatty acids (PLFA) to investigate microbial communities including both surface (<0.1 m) and subsurface (≥0.2 m) soil horizons.
The omission of two chemicals in newer Biolog plates resulted in lower total carbon source utilization as measured by average well color development (AWCD) and the number of responsive wells for a variety of microbial communities, including soil, groundwater, and laboratory microcosms.
Sequencing of bacterial 16S rRNA alleles from the human skin, mouth, gastrointestinal tract and vagina has revealed that each of these sites supports surprisingly diverse microbial communities, including substantial numbers of uncharacterized and uncultivated species [1], [2].
Invasive species can impact belowground processes and directly or indirectly alter soil microbial communities, including RFS.
To explore the genomic features of complex microbial communities including uncultivable microbes, a culture-independent metagenomic approach is practical.
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Hence, in this study, we enriched the microbial community (including the SMZ-degrading Microbacterium sp. strain C448) from this soil.
Li et al. (2013) reported specific root zone-associated microbial community including Acidobacteria, Actinobacteria, Nitrospirae and Spirochaetes in P. australis.
The Canadian soil aliquot, where we enriched the microbial community (including the SMZ-degrading strain) from, was sent to us from Canada and is described precisely in the paper of Topp et al. [30].
Furthermore, a microbial community including the genera Dysgonomonas, Bacteroides and Lysinibacillus expressed alkaliphilic xylanase, which may have potential implications in the pulp and paper industries (Lv et al. 2008).
In this study, we enriched the indigenous soil microbial community (including the single strain Microbacterium sp. C448, adapted to SMZ degradation) from a Canadian soil and we present a suitable approach, for soil remediation by inoculating a German soil with this microbial community established on carrier particles, at environmentally relevant concentrations of 1 mg kg−1.
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