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These results are similar to those of other studies of microbial communities assessed by non-cultural methods.
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The structure of microbial communities was assessed by both quantitative PCR and Illumina amplicon sequencing.
Microbial communities were assessed in biogas plants located in southern Germany near Aulendorf (biogas plant 1, BP1) and Hermaringen (BP2) in Baden-Württemberg.
The data support recent calls to take into account fine scale phylogenetic information about microbial communities when assessing their contribution to ecosystem processes [38].
No significant alteration to the microbial community function (assessed via community-level physiological profiling, CLPP) or structure (using denaturing gradient gel electrophoresis, DGGE) was observed following the initial 28 day exposure.
The microbial community was assessed by high-throughput sequencing of the 16S rRNA gene.
Microbial community composition assessed by phospholipid fatty acid was altered by restoration, but also varied by season and by site.
The influence of process parameters on the microbial community diversity, assessed by HTS, was analysed using CCA with the CANOCO software (version 4.5) [ 64] and a correlation analysis (Spearman).
To address our hypothesis, we quantified antibiotics commonly administered in animal-based agriculture, assessed microbial community composition, and assessed occurrence of antibiotic resistance genes in airborne PM emanating from beef cattle feeding operations.
We also sought to investigate the changes in the identity and abundance of the bacteria in gut microbial communities and to assess relationships between these assemblages and immunologic signatures of the sepsis patient.
Microbial community structure, as assessed by DGGE analysis and pyrosequencing, was comparable among the three extraction methods.
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