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The Illumina microarrays were processed at the UCSF Genomics Core.
Microarrays were processed at the same time for these and the drug abuse cases.
Affymetrix microarrays were processed in the Microarray Core Facility of the Institute of Research of Biotherapy, CHRU-INSERM-UM1 Montpellier (http://irb.chu-montpellier.fr/).
For the U133A-2.0 GeneChips the array hybridizations, washing, staining, as well as scanning were performed by the J.D. Gladstone Genomics Core, (San Francisco, CA), whereas the Ilumina microarrays were processed at the UCSF Genomics Core.
All HG-U133 Plus 2.0 microarrays were processed according to Affymetrix protocols, hardware and software, processed by the Affymetrix fluidics station 450 and hybridization oven 640 and scanned with an Affymetrix Gene Array Scanner 3000 7G.
All HG-U133 Plus 2.0 microarrays were processed according to Affymetrix protocols, hardware and software, including being processed by the Affymetrix fluidics station 450 and hybridization oven 640 and scanned with an Affymetrix Gene Array Scanner 3000 7G.
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Scan data from microarrays was processed by Affymetrix™ Microarray Analysis Suite™ software version 5 to yield Signal data.
As the name implies, this method is most often used to adjust for batch effects i.e. when microarrays are processed on different dates [ 12].
The raw images of the microarray were processed with Agilent's Feature Extraction software and further analyzed using R statistical analysis software (R Foundation for Statistical Computing) and related Bioconductor analysis package [ 24].
Microarray was processed in an Affymetrix GeneChip Fluidics Station 400.
The microarray was processed by Genomics Core Facility at Cleveland Clinic Foundation.
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