Expression microarrays were performed using Affymetrix GeneChip miRNA 3.0 Arrays kit as described by the manufacturer (Affymetrix, Santa Clara, CA, USA).
DNA microarrays were performed on the human probe Illumina BeadArray HT-12 (Illumina Inc., San Diego, CA, USA), which covers 34,598 probes.
Microarrays were performed on MDP and CDP samples by the Genome Technology Access Center (GTAC) at Washington University and data have been deposited in the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus with accession number GSE99467.
Three microarrays were performed for each probe.
MiRNA microarrays were performed as previously described [23].
Microarrays were performed between overlapping pairs of strains in a dye-swapped design.
Enzyme assays on the microarrays were performed as described in the previous work [13].
Gene expression profiles using cDNA microarrays were performed on the PDGF-releasing NFS.
The DNA fragments were labeled [18], and the DNA microarrays were performed as indicated above.
Four microarrays were performed per condition, using two distinct cell passages in dye-swap.
cDNA microarrays were performed for each cell population from three different individual donors, each in technical triplicate.
