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Images of Agilent microarrays were analyzed using Array-Pro Analyzer 4.5 (Media Cybernetics, Bethesda, MD, USA).
Microarrays were analyzed using the AB1700 Chemiluminescent Microarray Analyzer.
With 5 technical replicates, a total of 54 microarrays were analyzed.
For statistical analysis, all 21 microarrays were analyzed with the TMEV software [46].
Cohort B comprised 80 HCC patients, whose paraffin-embedded tumor tissues represented on tissue microarrays were analyzed by immunohistochemistry.
Virochip microarrays were analyzed with hierarchical cluster analysis, E-Predict, and Z-score single oligonucleotide analysis as previously described [7], [11], [35].
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Data for microarrays was analyzed as indicated above.
This is true when large-scale gene expression data from microarrays are analyzed [ 58, 75, 76].
Images from microarray were analyzed with Agilent Feature Extraction software (version 10.7.3.1).
The screened data of miRNA microarray were analyzed by the software, GeneSpring 7.3.1 (Agilent Technologies).
A third sample for longevity, which had been genotyped with the Illumina 550k microarray was analyzed separately and again, clustering was observed within the same hotspots (Table 1).
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