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Whilst tissue microarrays are available from commercial sources, many pathology laboratories prefer to make in-house arrays from their often extensive pathology archive to facilitate the correlation of their findings with clinical parameters.
Data from the microarrays are available from the Gene Expression Omnibus Database (NCBI; GSE19998).
For these purposes, we choose two model organisms for which large compendia of gene expression microarrays are available and also several networks can be collected from the literature, like maps of transcription factors binding sites (TF-BS), protein protein interactions (PPI), protein complexes (PC), and metabolic pathways (MP).
Detailed protocols for processing of microarrays are available at [ 77].
Clinical data and Affymetrix HG-U133 A + B microarrays are available for all patients.
Microarrays are available on a cost recovery basis by contacting Lila Vodkin, University of Illinois.
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The combined set of 910 genes used for our analysis of SNP microarrays is available as a spreadsheet in supporting file S1.
As no baboon-specific microarrays were available, RNA was hybridized to human arrays.
Gene expression data from microarrays were available for TOX3 in 160 breast tumours.
Further details on the HuSG9k microarray are available on the TAGC website (http://tagc.univ-mrs.fr/).fr/
The data from the microarray are available at NCBI GEO (GSE45145).
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