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In this conversion all probesets of the microarray were used.
QRT-PCR and tissue microarray were used to validate commonly regulated genes in multiple cancer types.
P-values derived from t-test for all ∼45000 probesets on the microarray were used for the GO-based functional clustering.
For analysis of correlations with gene activity in murine integration sites (Figure 7 and 8), transcriptional profiling data from wild-type MEFs analyzed on the MGU74Av2 Affymetrix microarray were used.
Most of the amplified blastomere cDNA from the 5-, 6- and 8- cell embryos (n = 11, 20, and 24, respectively), the 2 ICM and 2 TE used in the microarray were used for the qPCR experiments.
One of the powers of this approach is that the entire pipeline of methods used to assemble the correlation matrix is completely metadata independent – only the genomic alignment of probe sequences and the quantitative measurements made by the microarray were used.
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Analysis with a deeply representative murine cardiac-specific microarray was used to identify regulated genes.
However, if the same microarray is used for all species, results may differ between species because of species-specific mutations that affect the binding affinity of the probes.
DNA microarray was used as a tool to define the heat- and cold-shock stimulons in Yersinia pestis.
The oligonucleotide microarray was used to screen two sets of Salmonella strains for the presence of several antibiotic resistance genes.
The Roche Nimblegen Whole Human Genome Expression profile microarray was used to detected representative gene expression profiles of hDPSCs by ginsenoside Rg1.
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