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(iv) Finally, SNPs on the 500 K microarray were mapped to the reference sequence for each expression probe set.
(iii) Finally, SNPs on the 500K microarray were mapped to the reference sequence for each expression probe set.
To benefit from the greater genomic coverage and annotation information, unigenes present on the microarray were mapped to the current SGN unigene assembly (see methods).
To assess the influence of biallelic loss on expression, we performed the following steps: (i) First, genes assayed by the U133A microarray were mapped onto each biallelic loss segment of each sample.
12,257 of the gene identifiers represented on the microarray were mapped uniquely to upstream promoter sequences (FG3 assembly [ 73]) and defined the universe of upstream regions for motif enrichments.
The 3,478 QRNA predictions analyzed by microarray were mapped to the mouse-human UCSC genomic alignments (mm6-hg17) and were subset to the same regions analyzed by Cheng et al. [ 9] (i.e. not repetitive regions, for example), which were determined from the probe positions used in the tiling analysis (coordinates were converted to the hg17 genome release using the UCSC LiftOver tool [ 17]).
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Finally, each reporter on the microarray was mapped to the available official gene symbol to make the database easier for query.
The microarray data were mapped to PANTHER molecular function and biological process categories, as well as to biological pathways [77].
The microarray cDNAs were mapped to GO terms of class BP to assign known biological processes to the identified tissue differences in expression.
Microarray cDNAs were mapped to GO terms and KEGG pathways based on the human accession id, obtained from BLASTN, using the AnnBuilder package [29] from Bioconductor [30].
The probes of the different microarray platforms were mapped by a perfect match of their sequences.
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microarray were isolated
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microarray were quantified
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microarray were taken
microarray were done
microarray were found
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microarray were validated
microarray were plotted
microarray were used
microarray were described
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