Sentence examples for microarray sequences to from inspiring English sources

Since the microarrays predated the current draft genome which is based on strain T30-4, we used BLASTN to link the microarray sequences to the predicted T30-4 genes.

Based on the microarray sequences used to design our PCR primers, the cyp1a1 assay matched equally well against cyp1a3 with BlastX searches, while the cyp1c1 assay matched almost equally against cyp1c2, suggesting that more research are needed into the transcription of the different CYP1 genes and organ-specific function of their encoded proteins in cod.

Sequence comparisons were used to map microarray probe sequences to predicted Ensembl transcripts (Ensembl version 19) [ 29].

To accomplish this, we used BLAT (Kent 2002) to align the 69mer microarray probe sequences to the consensus gene set downloaded from SilkDB (Duan et al. 2010).

Of the 29 major histocompatibility complex (mhc) sequences present in the annotated immune-related microarray sequences, only those corresponding to the mhc1uaa and mhc1ze genes in fins (Table 3) were increased.

Strains that could not be typed by microarray were sequenced to characterise possible genetic alterations within the capsular polysaccharide (CPS) locus.

A few studies have utilized oligo-microarrays targeting junction sequences to detect fusion transcripts (Skotheim et al, 2009).

Microarray sequence features were mapped to NCBI Unigene clusters [ 28], and redundant clusters were condensed by averaging expression measurements.

Oh et al. (2009) used ChIP-chip (chromatin immunoprecipitation with microarray sequence recognition methods) data to infer that 748 Arabidopsis genomic-binding sites were occupied by basic helix-loop-helix transcription factor PIL5 and 166 nearby genes were upregulated directly by PIL5.

Such changes might, on one hand, be restricted to the microarray technology (e.g., modification or addition of sequences to a microarray, changes in data analysis procedures).

This percentage was consistent with a previous report [ 6] in which the authors used cDNA microarrays consisting of ~8000 sequences to demonstrate that approximately 7% of sequences assayed exhibited alteration by butyrate in human colon carcinoma cells.