Sentence examples for microarray scanning data from inspiring English sources

Microarray scanning, data acquisition, and identification of probe sets showing significant differences (at P < 0.05) in expression levels between different conditions were performed by Roche-NimbleGen (www.nimblegen.com).

Microarray scanning, data acquisition and identification of probe sets showing a significant difference (p = 0.05) in expression level between the different conditions were performed essentially as described previously [ 13, 46].

Microarray scanning, data acquisition and identification of probe sets showing a significant difference (p = 0.05) in expression level between the different conditions were performed essentially as described previously [ 24].

Probe features were extracted from the microarray scan data using Feature Extraction software v.9.5.3.1 (Agilent).

The microarray scan data were analyzed by Agilent's Feature Extraction software, which estimates the background level and gives a feature-specific background cut-off level per chip.

Gene expression information was extracted from microarray scan data by Agilent Feature Extraction (FE) software, which also detected and removed spatial gradients as well as local backgrounds.

After filtering of variants only two novel likely deleterious sequence variants were found to be present in genes located in shared homozygous regions between the two affected cases detected by a complementary Affymetrix 6.0 single nucleotide polymorphism microarray scan (data not shown), both of which cosegregated with the disease phenotype as determined by dideoxy sequence analysis.

We would like to thank Dr. Hans Mollenkopf from the Max Planck Institute for Infection Biology Berlin (MPI-IB) and Julia Jarells from the Max Planck Institute of Cell Biology and Genetics Dresden (MPI-CBG) for providing facilities and advise for microarray scanning and data extraction.

AKC performed RNA and protein isolation and quantification, RNA processing and microarray scanning and data mining, realtime quantitative RT-PCR and Western blot validation experiments, confocal immunofluorescence and histological analysis of suture tissues, and drafted the paper.

RNA quality control, cDNA labelling, microarray hybridisation, scanning, data extraction and data normalisation were performed by ServiceXS, Leiden, the Netherlands.

YY performed sample processing and labeling, microarray hybridizations, scanning, data processing, and participated in probe annotation efforts.