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Microarrays scanned on a Genepix 4000A® microarray scanner were analyzed using the Genepix software (Molecular Devices, Sunnyvale, CA).
Microarray data produced by the Agilent microarray scanner were preprocessed by removal of spots considered 'well above background' by the Agilent pre-processing software (Agilent Feature Extraction Software).
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A laser integrated microarray scanner was used to quantify and compare the biomass of Burkholderia cepacia G4 alone in presence of phenol degrading community of microorganisms (Callister et al. [2003]).
A microarray scanner was employed to detect any fluorescence-positive erythrocytes within 5 min, and 0.0001% parasitemia could be detected.
A GenePix 4200A microarray scanner was used to record the results.
An Axon GenePix 4000B microarray scanner was used to acquire a two-channel color image of the array fluorescence.
An MS 200 Microarray scanner was used to scan the chips, and the fluorescent intensities of the probes were extracted using the accompanying software (MS 200 Data Collection Software Nimblegenn).
An Agilent G2565BA DNA microarray scanner was used to scan arrays at 5 μm resolution, Feature Extraction Software 9.5.1 was then used to process and analyse array images.
ScanArray Lite® microarray scanner was used to scan arrays and ScanArray Express® software (PerkinElmer, Wellesley, MA) was used to process array images, align spots, integrate robot-spotting files with the microarray images and quantify spots as we previously described [ 37].
All equipment, which required temperature within certain limits for proper operation (including PCR instruments, Affymetrix fluidics stations, hybridization ovens and microarray scanner) was located in two air-conditioned rooms.
After hybridization on a customized maize 4 × 44 K array (Agilent ID 16047, original probe design as described in [ 20], the slides were washed, dried, and scanned on Agilent's High Resolution Microarray Scanner; data were processed with Feature Extraction Software.
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