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A subset of genes was validated by qRT-PCR and results were correlated well with microarray data indicating that microarray results provided an accurate report of transcript level.
The microarray results provided novel information about genes associated with ethylene metabolism in the Spcdc25 plants.
Validation of the microarray results provided many examples of genes that could be evaluated as potential biomarkers to predict response to treatment with SINE compounds.
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Assuming that microarray results provide the gold standard, we calculated false discovery rate to be 0.174% on average and false negative rate to be 0.209%.
Our gene expression microarray results provide further evidence for the role of these genes in mediating host susceptibility to S. aureus infection.
In conclusion, the factorial analysis of the microarray results provides important information on how their expression is influenced by important environmental factors.
Our EST resources and microarray results provide an important starting point to begin exploring putative candidate genes that may be associated with sex-specific (such as doublesex, transformer-2 or members of the yellow gene family) or nutrition-dependent (e.g. foxo) expression of horns.
In addition, our microarrays results provide preliminary evidence regarding the possible role of the genes and pathways studied in this trial.
Complete microarray results are provided as an additional file 1.
Complete microarray results are provided in Additional file 1 and the data were submitted to NCBI GEO Omnibus (GSE18120).
Our microarray results have provided the first genome-wide transcriptomic profiling to reveal the functional roles of two putative C2H2 zinc finger proteins.
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