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Overall, the miRNA microarray profiles generated for FFPE and FF samples showed high correlations across all 847 human miRNAs (R = 0.94, p < 0.0001, data not shown).
The enzyme levels on the platform were aligned to the microarray profiles generated using E. coli MG1655 grown on a glucose-containing minimal medium.
Currently, however, there is limited information available directly comparing these methods or examining the accuracy of microarray profiles generated using the individual methods.
A total of 870 annotated microarray profiles generated on HG-U133 Plus 2 arrays were retrieved from the International Genomics Consortium (exp O) website [ 29] and processed using custom Perl scripts.
A constraint-based analysis of microarray profiles generated from primary tumors and breast cancer cell lines in combination with response signatures was used to identify candidate genes and pathways that may play dominant roles in the breast cancer subgroups.
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The database includes analyzed global microarray expression profiles generated in hosts infected with the plant pathogenic bacterium X. fastidiosa, which causes Pierce's disease in grapevines.
Baseline microarray profiles were generated using Agilent 60-mer oligonucleotide arrays for each cell line.
To further delineate putative FHE factors and pathways that influence stem cell maintenance in a ZLL-dependent manner, microarray profiles were generated from specific ZLL-dependent and independent Arabidopsis accessions using Affymetrix ATH1 chips.
In an effort to understand these differential effects, additional microarray profiles were generated for both the MDA-MB-231 CN and H2 cells exposed to exogenous, recombinant TGF-β1 for 6 or 24 h (Additional files 6, 7, 8, 9).
Gene expression profiles generated by microarray have been used to develop prognostic scores, which when coupled with clinical parameters, have proven useful in predicting aggressive GCs and ultimately, outcome [ 13].
We used the profiles generated from microarrays rather than RNA-seq for this comparison, partly because the methods are better developed, and because it allowed us to compare our results with our previously published analysis of the hypoxic response of C. albicans [ 51].
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