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For additional information on microarray processing, see SI text.
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In the present study, we used a very simple statistical model for microarray data processing (see Methods).
The RNA samples were sent to the Adelaide Microarray Facility for the remainder of the processing (see website for processing protocols: http://www.microarray.adelaide.edu.au).edu.au
For tissue processing, see Supplemental Methods.
Accordingly, the application allows three levels of interaction: interface, score processing and data processing (see below).
For full details on data processing, see Supplemental Methods.
For further processing see Drucker et al, 2006.
(See [ 4] for a review, and see [ 5, 6] for a review of microarray processing software).
Microarray processing and the statistical methodology used to build and validate the signature is described in the Additional file 1.
Advances in microarray processing and simpler detection described here provide a path to migration of microarray technologies to clinical applications.
We thank Swegene Microarray Resource Centre at Lund University for assistance with the Affymetrix microarray processing.
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