Sentence examples for microarray probes related from inspiring English sources

We detected three potential homologs represented by two microarray probes, related to the Sphingolipid Metabolism Pathway (SMP) that were up regulated in adult males and females, lung schistosomula and eggs (Contig7899 lung schistosomula 2.5 fold, adult males 3.4 fold; Contig7987 eggs 3.1 fold, adult females 3.0 fold) of S. japonicum (Additional file 5).

The intensity of microarray probes is directly related to the effective association constant for duplexing, ∼Kduplex after correction for parasitic effects (or their neglect, if justified) such as the optical background, non-specific hybridization and saturation (see Eq. (2)).

In this paper, we extend the TOFI pipeline to design microarray probes for multiple, related, bacterial and viral pathogens.

Although there are many advantages in leveraging annotations from closely related species to design microarray probes from genomic sequences, there are obvious limitations to this method.

Many approaches have been used to relate microarray probe properties to hybridization signal intensity [26].

The hypothesis made was that we would be able to capture the underlying common biological processes related to the intensity of FDG uptake shared by different solid tumors by selecting the microarray probes most strongly correlated with FDG uptake (by means of univariate linear regression) in order to build a predictive signature (see Additional file 1 for full details).

RNA-Seq also avoids technical limitations inherent to the microarray platform related to probe performance, such as cross-hybridization, limited detection range of individual probes, as well as non-specific hybridization [ 6- 8].

Indeed, models which accurately capture important quantities related to microarray probe behavior have remained elusive.

Microarray probes were matched to gene identifiers using the CDF array annotation (version 18) provided by the University of Michigan microarray© lab56.

Fig. 3 Transcripts identified in RAP annotations and 44 K microarray probes.

In both root and shoot samples, about 95% of transcripts were supported by the microarray probes.