Sentence examples for microarray probes corresponding from inspiring English sources

If there were multiple microarray probes corresponding to the same gene, the probe with the greatest intensity in all tissues combined was used.

Tiling microarray probes corresponding to both forward and reverse strands from each window were binned into ∼600 bp windows, and log2 fold-changes of mutant versus wild-type from duplicate arrays for each mutant strain in each window were averaged.

Therefore, we re-analyzed the Tex19.1 −/− placenta microarray data using our recently developed microarray repeat-annotation technique (10) and found that a number of microarray probes corresponding to the LINE and LTR classes of retrotransposon are upregulated between 2- and 4-fold in Tex19.1 −/− placentas relative to littermate controls.

Correlation between methods were checked using linear best fit lines of log2 expression values for samples measured by RT-qPCR against microarray (using the microarray probe corresponding to the contig used for primer design).

Comparative genome hybridization studies using a microarray containing probes corresponding to genes encoding virulence factors and putative surface proteins failed to reveal clear cut associations between emm type and gene content among SDSE [13].

This method, known as "ChIP-on-chip", is based on chromatin immunoprecipitation (ChIP) assay, and identifies the enriched DNA fragments by hybridizing to microarrays with probes corresponding to genomic regions of interest [26] [28].

For example, the Noble group reported that rigorous thermodynamic calculations could not account for variations among solid-state microarray probe signals corresponding to the same rRNA target molecule [17].

The input to the top-scoring pair (TSP) algorithm is a gene expression matrix from a microarray probe set corresponding to semi-quantitative transcriptional measurement, from multiple unique tissue samples.

This difference could be due to the fact that in our experiment we performed a global analysis with a microarray that contained probes corresponding to all genes of the japonica rice genome and all complete LTR-retrotransposons.

This microarray contains 54,656 probes corresponding to 47,400 human transcripts.

Out of the 22,690 probe sets on the microarray, the two probes corresponding to p21 occupied the 14th-most and 17th-most stabilized positions.