Sentence examples for microarray probes by from inspiring English sources

The rationale behind this approach was to minimize the number of microarray probes by exploiting the comprehensive knowledge of polymorphisms combined in the Neisseria MLST website.

Total RNA (1 μg) was used to generate microarray probes by standard Affymetrix protocol (Enzo Diagnostics; Farmingdale, NY), which were hybridized to the Affymetrix Drosophila genome 2 arrays (Affymetrix; Santa Clara, CA).

Correlations of transcription factors were performed by defining differentially expressed genes at FDR<1% in breast cancer prognosis measured with metastasis events within 5 years [12], which correspond to 179 microarray probes, or by defining differentially expressed genes at FDR<5% in docetaxel treatment response [37], which correspond to 1,525 probes.

First, microarray probes were optimized by screening 244,000 probes for hybridization with RNA from infected and uninfected macrophages.

The "present" and "absent" information of microarray probes were obtained by applying the mas5calls function in biocondutor (http://www.bioconductor.org).

Landmarks across a genome (such as the locations of microarray probes) are displayed by region markers.

Step 2: the microarray probes are aligned by BLAT to the individual gene members of each OG.

Although the folding of microarray probes is affected by the interaction with surface of microarray, we assume that the free energy of the folding is proportional to that in the bulk solution calculated by UNAfold.

The most significant rice homologues to the unigenes used to design the barley microarray probes were identified by BLASTN searches of the gene models from the Rice Genome Annotation Project from Michigan State University (Rice Pseudomolecules v5 database [ 60]).

As a way of addressing what categories of genes are within each cluster and whether any of these are enriched for a particular state, GO terms were assigned to each gene represented by the microarray probes, and these were curated further by a qualitative literature-based approach.

The hypothesis made was that we would be able to capture the underlying common biological processes related to the intensity of FDG uptake shared by different solid tumors by selecting the microarray probes most strongly correlated with FDG uptake (by means of univariate linear regression) in order to build a predictive signature (see Additional file 1 for full details).