Sentence examples for microarray probe IDs from inspiring English sources

Therefore, to help users we have built in an Omics validator tool (http://www.gramene.org/db/omics/validator) for validating and mapping microarray probe IDs, gene names or gene symbols to a locus ID in user provided data files.

For instance, instead of exporting sequence in the above example, the user could have chosen gene identifiers and names mapping to the uploaded microarray probe IDs.

A probe annotation was performed to transform the microarray probe IDs into gene IDs recognized by Ingenuity Pathways Knowledge Base (IPA, Ingenuity Systems, Mountain View, CA; http://www.ingenuity.com).com

We imported microarray probe IDs into Pathway Studio software (Ariadne Genomics, Rockville, MD, USA), and queried the ResNet 7.0 database (Ariadne Genomics) for interactions among genes and gene products derived from the current literature (Nikitin et al. 2003).

Before applying the SubMap, each microarray probe ID was converted into its corresponding HUGO gene symbol (http://www.gene.ucl.ac.uk/nomenclature/), and multiple probe data corresponding to a single gene symbol was averaged.

Microarray Probe ID, primer sequences, amplicon sizes, annealing temperature and qPCR efficiency are shown.

To test the validity of combining qRT-PCR data with microarray data, we compared expression profiles in both analysis; A) (PDGFA (TaqMan) and PDGFA (microarray, probe id 435470), B) PDGFB (TaqMan) and PDGFB (microarray, probe id 343320) and finally C) PDGFRA (TaqMan) and PDGFRA (microarray, probe id 52096).

For Gene Search and Coexpression analysis, keywords such as HGNC symbol, description, database (pfam, KEGG, TAIR) ID, microarray probe ID, or sequence are valid as query input.

For other types of IDs (for instance, Affymetrix microarray probe set IDs) not included in the common ID lists, Pathview's auxiliary functions will map user data to pathways when users provide the ID mapping data manually.

Microarray probe EntrezGene IDs were converted to Ensembl Gene IDs using IDconverter [47], entries resulting in multiple or missing Ensembl Gene IDs were removed.

To correctly map target genes to microarray probe set IDs, we then accessed the Affymetrix website to obtain the detailed HG-U133A annotation [ 42].