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Microarray plots showing the relationship between mean fold changes and average intensities in the compared groups.
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Expression profiles of the different cell types are depicted in Fig. 1A–I as scatter plots, showing the relative intensities of all probes represented on the microarrays.
Volcano plots showing the correlation between p values and fold change of probes for each microarray experiment.
Plots showing differential expression of genes in the MaSC/basal versus luminal progenitor (LP) subset, MaSC/basal versus mature luminal (ML) cell subset and LP versus ML subset, as determined by microarray [ 24 ] and RNA-Seq.
The displacement plots shown in Figs.
Box plots show distribution and median.
The qPCR and microarray results were compared by plotting the qPCR cycle threshold (Ct) value versus the log2 of the array signal for each miRNA in all nine tissues (representative plots are shown in Figure 1, with the remaining plots shown in Additional Files 2, 3, 4, 5, 6, 7).
Polar plots show tuning-curves.
All plots show standard errors.
The plots show several things.
(A ) Box plots show decreased levels of LARP7 in invasive breast carcinoma (left), invasive ductal carcinoma, and lobular carcinoma (right) compared with normal breast tissues in two microarray data sets.
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