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Microarray platforms are at the center of this paradigm shift in that they provide an affordable simultaneous assessment of expression levels of a sample preparation in a single experiment.
Microarray platforms are capable of parallel genotyping of hundreds of thousands of SNPs in one measurement.
The rmodel source code and extended gene annotations for 11 microarray platforms are available at http://harlequin.jax.org/rmodel.org/rmodel
The gene expression data from different species using different species-specific microarray platforms are not directly comparable.
A variety of gene expression microarray platforms are used today, including spotted cDNA arrays, Affymetrix GeneChip arrays, Agilent ink-jet arrays and Illumina long-oligonucleotide bead-based arrays [4], [5].
Several microarray platforms are currently available.
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Agilent 8x60K microarray platforms were used for these transcriptome analyses (Xuan et al. 2013).
An index of microarray platforms was compiled to aid in the comparison of microarray data.
Third, two different microarray platforms were used in generating data for this study.
Because several different microarray platforms were used in those cohorts, we ensured that the probes were matched to identical genes.
Four microarray platforms were used in this analysis including; Agilent, Illumina, Affymetrix Exon 1.0 ST, and M430 arrays.
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