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Our novel microarray platform builds upon previously described single base extension methods employed for SNP detection [15], [16].
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Another popular system is the Agilent microarray platform which was built using the SurePrint technology that allows using considerably longer, 60 nt-long probes.
Structure C12 is a south-facing platform built from pumice.
Parameters of the tool are object type (two organisms, two individuals, two tissues, etc)., type of computational gene family inference, experimental meta-data, microarray platform, gene annotation level and genome build.
We built a custom microarray platform containing 60-mer oligonucleotide probes designed based on 14,612 isotigs (probes to 4 isotigs could be not designed) from all isotigsin proprietary NGS data and 3,470 EST sequences from the "sapwood" and "inner bark" categories (including a full-length cDNA library) in the ForestGen database [ 22].
These three files are used as input to ADMIXTURE, with default options and K (the number of ancestral populations) set to 4. We acquired genomic data from the Personal Genome Project PGPP) website (https://my.pgp-hms.org/public_genetic_data). We sort the genotype data from 23andMe microarray platforms by genome build.
Human microarray platform, GPL1528; human HCC microarray data, GSE1898; mouse microarray platform, GPL1529; mouse HCC microarray data, GSE1897.
A robust small-molecule microarray platform for screening cell lysates.
We generated the data from each mouse model using the same microarray platform and reference RNA.
Shippy, R. et al. Using rna sample titrations to assess microarray platform performance and normalization techniques.
Multiplexing in the microarray platform was supported by a medium throughput protein expression system.
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