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Once the set of valid edges have been defined, for each microarray observation all valid pathways are extracted.
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Selected cDNA microarray observations were confirmed by RNase protection assay.
These qRT-PCR findings support the microarray observations overall.
These results are consistent with our microarray observations.
The microarray observations were validated by quantitative reverse transcription-PCR (qRT-PCR) for some representative transcripts.
Our problem has the following inputs: the network structure, microarray observations and a response variable.
All fold changes are the result of two biological replicates of the microarray experiment, and all observations with low intensity (<50) in both CRY2 normal and CRY2 knockdown populations have been discarded.
TCGA analyzed 489 ovarian cancer tissues, and performed miRNA microarray analyses on all samples.
Principal Component Analysis of microarray data of all N-depletion experiments conducted with the accessions Col-0 and Tsu-0.
We extract the gene expression observations for all genes on this pathway from the AltGenExpress development series microarray expression data [ 12] downloaded from the ArrayExpress database [ 2].
We extract the gene expression observations for all genes on this pathway from the AltGenExpress abiotic stress microarray expression data [ 13].
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