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Usually microarray manufacturers provide annotation files for their oligo sets.
Different microarray manufacturers provide distinct underlying technologies, protocols and reagents specific to each system [ 1].
Microarray manufacturers provide data analysis software (e.g., microarray suite software) along with plate readers that help in the creation of raw data.
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Manufacturers provide an introducer tool as well.
It should also be noted that discordant results will often be obtained because of differences in the annotation provided by microarray manufacturers.
Full disclosure: the manufacturer provided review product.
This need has not gone unnoticed among automation specialists; one company, Caliper Life Sciences, collaborated directly with microarray manufacturer Affymetrix to develop the Array Station, an instrument for the automated production of GeneChip microarray-ready targets from previously purified RNA or DNA.
RNA samples were isolated and processed according to microarray manufacturer's instructions.
Hybridization was performed according the recommendations by the microarray manufacturer.
RNA processing protocols were generally those recommended by the Affymetrix microarray manufacturer.
Hybridizations were performed according to the microarray manufacturer's instructions (Agilent Technologies).
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