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Expression profiling was conducted with the 60K Rice Whole Genome Microarray (information available at ; GreenGene Biotech).
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To further assess the relevance and applicability of this 14-3-3ζ 14-3-3ζ 14-3-3ζelected ER-posignaturemors from three other independent breast tumor microarray datasets weth clinical information available.
The crystal structure provides an opportunity to test the information available from microarray experiments on a highly organized RNA.
The increasing amount of information available from microarray experiments [ 9, 10] and TF binding sites [ 11, 12] requires the development of new tools to improve our understanding of gene expression and transcriptional regulation.
We further filtered by the presence of the predicted target gene on the microarray chip used in the experiment, information available at GEO datasets.
Today, a large portion of microarray platform providers make all probe sequence information available; in addition, MIAME guidelines require submission of probe sequences for each spot on a microarray [ http://www. mged.org/Workgroups/MIAME/miame.html].
Several probes spotted on the arrays did not have any accession reference due to the incomplete information available at the time of microarray construction.
To analyze the microarray data in the context of biological functions we used information available from the Gene Ontology (GO) consortium (http://www.geneontology.org).org
With sequence information available for a single representative bacterium, a DNA microarray can be produced and used to compare that organism to a number of related bacteria.
Currently, however, there is limited information available directly comparing these methods or examining the accuracy of microarray profiles generated using the individual methods.
Furthermore, even though DNA microarrays normally use known EST sequences, typically only in model organisms is sufficient sequence information available to examine levels of polymorphism although this is rapidly improving as more sequence information becomes available for non-model organisms.
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