Microarray images were analyzed with ImaGene software (BioDiscovery, Inc., Hawthorne, CA, USA), whereas the EMMA platform was used for data evaluation.
Microarray images were acquired by GSC 3000 laser scanner (Affymetrix).
Microarray images were analyzed with the BioDiscovery Imagene software package.
Microarray images were analyzed using Quantarray v3.0 software (PerkinElmer).
Affymetrix microarray images were interpreted by RMA [49], using Bioconductor in R [97], [98].
Microarray images were analysed by using Feature extraction software version A.8.5.1.1.
Microarray images were analyzed by using GenePix Pro and post-processing was performed essentially as described earlier [50].
Microarray images were analyzed using GenePix software (Axon Instruments, Union city, CA) to obtain raw spot intensity data.
Microarray images were acquired by GenePix 4000 microarray scanner using GenePix Pro 3 microarray analysis software (Axon Instruments, Sunnyvale, CA, USA).
Microarray images were analyzed using the Agilent feature extraction software and Rosetta Resolver (Rosetta Biosoftware) to determine fold changes and statistical confidence.
Microarray slides were scanned using Agilent microarray scanner G2505B and the obtained microarray images were analyzed using the Genepix Pro™ 4.0 software.
