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(D) Differentially regulated microarray genes in cancer pathway in INO80/YY1 complex knockdown HeLa cells.
Fig. 1D shows the differentially regulated microarray genes in cancer pathway after knocking down the indicated subunits of INO80/YY1 complex.
Based on the results from microarray, genes in Table 3 are subdivided into four groups.
This high-dimensional training dataset is subjected to clustering to analyze the occurrence of microarray genes in more than one cluster.
Among a total of 833 pathways, only those containing at least 10% of microarray genes in each pathway were used in the experiment.
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On the second microarray, genes expressed in -4 W and -2 W greenhouse-grown basal stems were compared, and on the last microarray genes expressed in -4 W and -2 W greenhouse-grown roots were compared.
On the first microarray genes expressed in -4 W and -2 W field-grown lower stems from 2004 were compared, on the second microarray genes expressed in -4 W and -2 W greenhouse-grown lower stems were compared and on the last microarray genes expressed in -4 W and -2 W greenhouse-grown roots were compared.
Long-oligonucleotide microarrays representing almost all genes in A. thaliana genome have been used to this end.
Results are also in agreement with microarray gene analysis in Fe-deficient A. thaliana roots [ 14].
Sex ratio, condition index and microarray gene expression in gonads, were analyzed in each progeny (n = 60).
To identify robust signals in genes reliably upregulated by TNFα, we first measured microarray gene expression in vitro and searched methodologically comparable, publicly available data sets to identify concordant signals.
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