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On the second microarray, genes expressed in -4 W and -2 W greenhouse-grown basal stems were compared, and on the last microarray genes expressed in -4 W and -2 W greenhouse-grown roots were compared.
On the first microarray genes expressed in -4 W and -2 W field-grown lower stems from 2004 were compared, on the second microarray genes expressed in -4 W and -2 W greenhouse-grown lower stems were compared and on the last microarray genes expressed in -4 W and -2 W greenhouse-grown roots were compared.
On the first microarray, genes expressed in basal stems 4 weeks and 2 week before anthesis (-4 W and -2 W) grown in the field in 2004 were compared.
Because a global assembly of ESTs was used to design this first version of the microarray, genes expressed in many tissues of the plants including cotton fibers, are represented.
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To assess the concordance of expression pattern by RNA-Seq and microarrays, all genes expressed by RNA-Seq were evaluated as to whether they were identified as expressed in all microarrays, a subset of microarrays or not represented on the microarray.
The molecular mechanisms of action of a HIV protease inhibitor, ritonavir, on hepatic function were explored on a genomic scale using microarrays comprising genes expressed in the liver of Sprague Dawley rats (Rattus norvegicus).
Essential problem with application of the multivariate procedures to the microarray gene expression data as expressed in recent publications is associated with reproducibility of the complex constructions resulting from such analyses.
Gabrielsson et al. [ 9] performed a microarray analysis of genes expressed in the human adipose tissue.
Transcriptomic analysis was performed with a microarray of 6,473 genes expressed in muscle ("Myochips" available from OUEST-genopole®, France) as described in [ 28].
To illustrate their utility, we use this microarray to catalogue genes expressed in citrus globular embryos, and show how embryogenesis in citrus proceeds expressing a similar set of genes as it does in Arabidopsis.
Microarray analysis of genes expressed in the whole joint of those animals revealed induction of protease genes known to contribute to the degradation of the cartilage matrix that was prevented when joints were immobilized [ 45].
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