All microarray experiments in this study are available from the TAIR database (https://www.arabidopsis.org/servlets/Search?type=expr&search_action=new_search) (Submission Number(s): ME00325, ME00338, ME00328, and ME00339).
We performed DNA microarray experiments in order to compare gene expression responses to the heat treatment at 39°C with the gene expressions in non-treated control cells.
Use of rationally designed microarray experiments in IFN biology yielded informative clusters that may provide candidate genes for diagnostic or for evaluation of therapeutic possibilities.
We also performed microarray experiments in PC12 cells to gain insight into the molecular changes that may mediate this phenotype.
We undertook microarray experiments in wild type Rat-1 cells and c-myc-null cells exiting mitosis that were treated with cdr2 or control siRNA pools (Fig. S4).
Microarray experiments in mice have shown that high fat diet can lead to elevated expression of genes that are disproportionately associated with immune functions.
In contrast, whole genome microarray experiments in synthetic complete (SC) medium reported that Mediator associates with many genes at both promoter and coding regions.
QTLs identified in silico were compared against evidence from a variety of sources including previous mouse PPI QTLs, meta-analysis of human schizophrenia genome scans, and microarray experiments in an attempt to find convergent or consistent patterns of evidence.
The number of changing genes in the microarray experiments in the SAP102 and PSD-95 samples was inversely correlated with the number of backcrosses and active marker selection, suggesting the cis-acting effect, if it exists, only partially contributes.
All microarray experiments in this study were done in accordance with MIAME guidelines and the gene expression data sets presented have been deposited in the GEO database (GEO series entry GSE16485).
We used published SAGE (serial analysis of gene expression) data to characterize gene expression because comparative studies have also demonstrated a much higher reproducibility of SAGE (serial analysis of gene expression) experiments than microarray experiments in characterizing mRNA levels [27].
