It has been shown that most of the variability in microarray experiments derives from the biological sample itself, even when conducted under apparently identical conditions.
First, we identify suitable microarray experiments that derive gene sets related to ovary activation.
We ran the MEME motif-finding program [ 3] on the promoter regions of groups of genes that showed similar expression patterns to the known targets of these factors in microarray experiments to derive models of their binding specificity and identify putative binding sites.
The design of the microarray experiment and the data derived from it are detailed in the public database ArrayExpress (http://www.ebi.ac.uk/microarray-as/ae/; accession E-TABM-950).
We further inspected if the classification approaches retrieved additional functional peaks, i.e., the peaks that were mapped to SRC-1-sensitive genes derived from microarray experiment.
In the NMD microarray experiment, the cell lines were derived by Epstein-Barr virus transformation of peripheral mononuclear leukocytes from patients and their healthy brothers.
In addition, the replication kinetics of Sakl0C-left is highly similar to the one derived from the microarray experiment.
Figure 1 presents the expression of de novo lipogenesis -associated genes in the AT depot transcriptomes among the different infection models (the data are derived from the microarray experiment).
In agreement with this previous work, an increase in the AA levels over time was also detected in our data obtained from finished malts derived from the microarray experiment (Table 4).
To highlight and prioritize cellular physiology, metabolism, or pathways differentially active within a microarray experiment, Literature Lab uses an experimentally derived gene list, pre-defined sets of non-ambiguous key terms ("domains"), inclusive gene nomenclature, comprehensive literature interrogation, and a comparison of the experimental gene set results with randomly generated gene sets.
