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This microarray experiment contains a set of 22 k Arabidopsis ATH-1 genome array transcriptome data of leaves at developmental stage 3.9 taken after 1, 2, 4, 8, and 12 hours in both darkness and light [ 36].
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The resulting databases from microarray experiments contained additional information which may be useful for future investigations.
The procedure started by the extraction of microarray experiments containing equidistant time-series data from the Many Microbes Microarray Database (M3 D, [ 9]).
The list of K-dependent transcripts identified in previous microarray experiments contained a number of genes with putative function in the biosynthesis (CYP and MAM families) or breakdown (myrosinase family) of GLS [ 6].
These files are the output of a microarray experiment and contain the result of the intensity calculations per probe or pixel.
A total of 30 microarray experiment series containing 39 cancer types have been used to investigate the expression profile of 528 human kinase genes in tumor cells.
Since the above analysis of IRF/ISRE TFBSs was based on very stringent criteria and thus likely to miss many known IFN-inducible genes (see Methods), we also produced a list of 187 IFN-responsive genes from the literature and asked how many of those genes showed expression changes in our microarray experiment and contain IRF/ISRE or GAS TFBSs.
Like most actinobacteria, S.erythraea has a 71.1% GC content genome which prevented us designing and performing microarray experiments that contained all ORFs (Additional file 1: Figure S1).
The microarray dataset obtained from these experiments contains expression levels for 22690 Affymetrix probe set IDs.
The potato oligo (60-mer) microarray (POCI) used in the experiments, contains 42,034 features based on a potato unigene set [ 46].
The raw data from microarray experiments (CEL files) contains the expression level (intensity) of probe sets.
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