The 192 microarray experiments collected had previously been published elsewhere [ 6– 8, 53– 64].
Hibbs et al. (2007) compiled 2394 yeast microarray experiments, collected from 81 different publications, and TransfactomeDB (Foat et al. 2008) similarly cataloged ∼4000 yeast microarray experiments from the Gene Expression Omnibus (GEO) database (Barrett et al. 2011).
In the second, while microarray experiments collect an increasing amount of data to be correlated, the network reconstruction is an NP-hard problem.
Samples for the microarray experiment were collected at 15 minutes, 30 minutes, one hour and three hours after rewetting.
AD analyzed the results, carried out bioinformatic analyses and wrote the paper; MJJ carried out bioinformatic analyses and provided critical discussions; NP performed the microarray experiment and collected data; TMB provided critical discussions; BJZ initiated the study, designed the experiment and wrote the paper.
FC designed the experiment, collected the samples, performed the microarray hybridization, analyzed the data and wrote the manuscript.
Culture samples for microarray experiments were collected at exponential, transition, and stationary phases.
Gene expression data of 795 genes related to isoprenoid pathways from 118 microarray experiments were collected (Wille et al. 2004).
For the first set of microarray experiments, samples collected on eleven days with similar weather conditions were selected (June 1, June 15, June 29, July 6, July 18, July 27, August 3, August 11, August 18, August 29, September 12).
