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The biological relevance of the genes identified was supported by two independent sources, namely differential expression in the microarray experiment analyzed and known disease associations based on genetic screening or mechanistic studies.
KJ designed the microarray experiment, analyzed the differentially expressed genes and drafted the manuscript.
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We evaluated microarray experiments analyzed by qRT-PCR the expression of some of these genes.
To infer the regulatory phrases from the microarray experiments analyzed in this work we used the value T1 = 75%.
PM performed the microarray experiments, analyzed data and drafted part of the manuscript.
TAM designed and performed the microarray experiments, analyzed and interpreted the data, and wrote the manuscript.
JC and GGC performed some of the microarray experiments analyzed in this study.
The complete list of microarray experiments analyzed is reported in Supporting Information, Table S1.
HC carried out the microarray experiments, analyzed data and drafted the manuscript.
By changing the subset of microarray experiments analyzed, condition-specific gene modules are identified as well.
KVP carried out microarray experiments, analyzed the transcriptome data and drafted the manuscript.
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