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FP conducted the microarray design, performed the experiments, analyzed the data and wrote the manuscript.
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SKK contributed to the microarray experiment study design, performed the RNA extraction and microarray procedures, and wrote the manuscript.
GM carried out the cDNA-AFLP and microarray experiments (including the Combimatrix array design), performed microarray statistical analyses, helped with grapevine infections, collaborated on conception of the study and wrote the manuscript.
DMD-CGH microarray design was performed using the web based Agilent eArray database version 4.5 [ 28] (Agilent Technologies, Santa Clara, CA).
TR contributed to the gene list, probe and overall microarray design, and performed cloning and preparations of probes for microarray manufacturing.
Microarray design was performed by Roche Diagnostics NimbleGen (USA) using a selected set of T. brucei TREU927 DNA sequence files obtained from the Pathogen Sequencing Group at the Wellcome Trust Sanger Institute (Cambridge), chosen to provide coverage of megabase chromosomes and some examples of telomeric sequences.
DYLY and DKS acquired the array data sets, participated in the design, performed microarray analysis and drafted the manuscript.
Primers sequences are provided in Additional file 2. JG conceived the experimental design, performed microarray, bioinformatics and RT-PCR analyses, prepared figures and tables, and wrote initial manuscript draft.
SNC contributed to experimental design, performed the microarray design, experiments and data analysis and contributed to writing the manuscript with AS and JEB.
CH conceived of the study, participated in its design, performed the microarray analysis and helped to draft the manuscript.
RK conceived of using vRNA as a reference sample, carried out the molecular biology experiments, created the experimental design, performed the microarray analysis and drafted the manuscript.
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