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Raw and normalised transcriptomic data are publically available at Gene Expression Omnibus (Accession number: [GSE13787]) and at the Curie Institute microarray dataset repositories [ 42].
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Analysis of an independent microarray dataset, the Repository for Molecular Brain Neoplasia Data (REMBRANDT) [18] linked the AJAP1 expressions levels to survival.
Given that an individuals sex is usually easily observable and unambiguous for many species, it is surprising the number of microarray datasets in public repositories that lack the associated sample sex information.
The resulting microarray dataset is available from the ArrayExpress repository (http://www.ebi.ac.uk/arrayexpress, accession number: E-MTAB-601).
Hence, in the present study, we aimed at identifying the candidate lncRNA associated with tongue SCC using the microarray dataset available in the public microarray data repository.
The full microarray dataset is submitted to NCBI's Gene Expression Omnibus (GEO) repository with series accession number GSE68792.
The full microarray dataset from [ 4] is available in accession series in the NCBI GEO (Gene Expression Omnibus) repository [GEO GSE13113].
In this study, we chose the microarray dataset GSE5550 normalized by variance stabilizing transformations (VSN) method, which is publicly available on the Gene Expression Omnibus (GEO) repository [ 15].
In this study, we analyzed the microarray dataset GSE5550, normalized by variance stabilizing transformations (VSN) method, which is publicly available on the Gene Expression Omnibus (GEO) repository [ 3].
HOPX expression was evaluated using the microarray dataset from Lung Genomics Research Consortium LGRCC) and the dataset from the previous reports21.
The authors would like to thank the contributors of the microarray dataset GSE21997 and the ChIP-seq datasets of GSE49651, ENCSR493NBY and ENCSR985MIB.
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